J4_6WOO_003
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGG*CGC*GAUGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 6WOO|1|3|U|8, 6WOO|1|3|U|47, 6WOO|1|3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WOO_003 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.1755
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6WOO|1|3|G|7
6WOO|1|3|U|8
6WOO|1|3|G|9
6WOO|1|3|G|10
*
6WOO|1|3|C|25
6WOO|1|3|G|26
6WOO|1|3|C|27
*
6WOO|1|3|G|43
6WOO|1|3|A|44
6WOO|1|3|U|45
6WOO|1|3|G|46
6WOO|1|3|U|47
6WOO|1|3|C|48
6WOO|1|3|C|49
*
6WOO|1|3|G|65
6WOO|1|3|C|66
Current chains
- Chain 3
- Met-tRNA-iMet
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL5
- Chain SS
- uS13
Coloring options: