J4_6WOO_007
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6WOO|1|5|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WOO_007 not in the Motif Atlas
- Homologous match to J4_9AXU_004
- Geometric discrepancy: 0.0657
- The information below is about J4_9AXU_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.2
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6WOO|1|5|G|1492
6WOO|1|5|G|1493
6WOO|1|5|U|1494
6WOO|1|5|U|1495
6WOO|1|5|C|1496
*
6WOO|1|5|G|1520
6WOO|1|5|G|1521
6WOO|1|5|U|1522
6WOO|1|5|U|1523
6WOO|1|5|A|1524
6WOO|1|5|G|1525
*
6WOO|1|5|C|1614
6WOO|1|5|C|1615
*
6WOO|1|5|G|1829
6WOO|1|5|G|1830
6WOO|1|5|U|1831
6WOO|1|5|C|1832
6WOO|1|5|G|1833
6WOO|1|5|U|1834
6WOO|1|5|A|1835
6WOO|1|5|C|1836
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- eL19
- Chain X
- uL23
- Chain g
- eL34
- Chain j
- eL37
- Chain k
- eL38
- Chain l
- eL39
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