J4_6WQN_003
3D structure
- PDB id
- 6WQN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 6WQN|1|1|U|697, 6WQN|1|1|U|698, 6WQN|1|1|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WQN_003 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.3705
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6WQN|1|1|C|644
6WQN|1|1|A|645
6WQN|1|1|A|646
6WQN|1|1|G|647
*
6WQN|1|1|C|669
6WQN|1|1|G|670
6WQN|1|1|U|671
6WQN|1|1|A|672
6WQN|1|1|G|673
*
6WQN|1|1|C|680
6WQN|1|1|G|681
6WQN|1|1|A|682
6WQN|1|1|G|683
6WQN|1|1|U|684
*
6WQN|1|1|G|694
6WQN|1|1|C|695
6WQN|1|1|G|696
6WQN|1|1|U|697
6WQN|1|1|U|698
6WQN|1|1|U|699
6WQN|1|1|A|700
6WQN|1|1|G|701
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L35
- Chain S
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L15
Coloring options: