J4_6WRS_001

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6WRS|1|1|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WRS_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1335

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WRS|1|1|C|271
6WRS|1|1|C|272
*
6WRS|1|1|G|416
6WRS|1|1|A|417
6WRS|1|1|G|418
6WRS|1|1|U|419
6WRS|1|1|A|420
6WRS|1|1|C|421
*
6WRS|1|1|G|445
6WRS|1|1|G|446
6WRS|1|1|A|447
6WRS|1|1|A|448
6WRS|1|1|U|449
6WRS|1|1|C|450
6WRS|1|1|U|451
6WRS|1|1|G|452
*
6WRS|1|1|U|467
6WRS|1|1|A|468
6WRS|1|1|A|469
6WRS|1|1|G|470

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28