J4_6WRU_001

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6WRU|1|1|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WRU_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1345

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6WRU|1|1|C|271
6WRU|1|1|C|272
*
6WRU|1|1|G|416
6WRU|1|1|A|417
6WRU|1|1|G|418
6WRU|1|1|U|419
6WRU|1|1|A|420
6WRU|1|1|C|421
*
6WRU|1|1|G|445
6WRU|1|1|G|446
6WRU|1|1|A|447
6WRU|1|1|A|448
6WRU|1|1|U|449
6WRU|1|1|C|450
6WRU|1|1|U|451
6WRU|1|1|G|452
*
6WRU|1|1|U|467
6WRU|1|1|A|468
6WRU|1|1|A|469
6WRU|1|1|G|470

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28