J4_6WYV_001

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6WYV|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WYV_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1911

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|C|268
6WYV|1|I|C|269
*
6WYV|1|I|G|370
6WYV|1|I|A|371
6WYV|1|I|G|372
6WYV|1|I|U|373
6WYV|1|I|A|374
6WYV|1|I|G|375
*
6WYV|1|I|U|399
6WYV|1|I|G|400
6WYV|1|I|A|401
6WYV|1|I|A|402
6WYV|1|I|U|403
6WYV|1|I|A|404
6WYV|1|I|U|405
6WYV|1|I|G|406
*
6WYV|1|I|C|421
6WYV|1|I|A|422
6WYV|1|I|A|423
6WYV|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains