J4_6XA1_001
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)(PSU)*AAG(G7M)(H2U)UG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6XA1|1|Bv|U|8, 6XA1|1|Bv|H2U|47, 6XA1|1|Bv|U|48
- QA status
- Modified nucleotides: 1MG, 2MG, M2G, PSU, G7M, H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XA1_001 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2188
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6XA1|1|Bv|G|7
6XA1|1|Bv|U|8
6XA1|1|Bv|1MG|9
6XA1|1|Bv|2MG|10
*
6XA1|1|Bv|C|25
6XA1|1|Bv|M2G|26
6XA1|1|Bv|PSU|27
*
6XA1|1|Bv|A|43
6XA1|1|Bv|A|44
6XA1|1|Bv|G|45
6XA1|1|Bv|G7M|46
6XA1|1|Bv|H2U|47
6XA1|1|Bv|U|48
6XA1|1|Bv|G|49
*
6XA1|1|Bv|C|65
6XA1|1|Bv|C|66
Current chains
- Chain Bv
- P-tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10-like
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain j
- Eukaryotic peptide chain release factor subunit 1
Coloring options: