J4_6XA1_004

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

6XA1|1|L5|G|1258, 6XA1|1|L5|C|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|C|968
6XA1|1|L5|U|969
6XA1|1|L5|C|970
*
6XA1|1|L5|G|1057
6XA1|1|L5|C|1058
6XA1|1|L5|C|1059
*
6XA1|1|L5|G|1227
6XA1|1|L5|C|1228
6XA1|1|L5|G|1229
6XA1|1|L5|C|1230
*
6XA1|1|L5|G|1255
6XA1|1|L5|G|1256
6XA1|1|L5|A|1257
6XA1|1|L5|G|1258
6XA1|1|L5|C|1259
6XA1|1|L5|G|1260

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29