J4_6XA1_005

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

6XA1|1|L5|A|2353, 6XA1|1|L5|U|2356, 6XA1|1|L5|U|2815

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|OMC|2352
6XA1|1|L5|A|2353
6XA1|1|L5|A|2354
6XA1|1|L5|A|2355
6XA1|1|L5|U|2356
6XA1|1|L5|A|2357
6XA1|1|L5|U|2358
*
6XA1|1|L5|A|2376
6XA1|1|L5|G|2377
6XA1|1|L5|G|2378
*
6XA1|1|L5|OMC|2811
6XA1|1|L5|A|2812
6XA1|1|L5|U|2813
6XA1|1|L5|G|2814
6XA1|1|L5|U|2815
6XA1|1|L5|U|2816
*
6XA1|1|L5|A|3835
6XA1|1|L5|G|3836

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31