J4_6XA1_008

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6XA1|1|L5|A|2683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|G|2605
6XA1|1|L5|G|2606
*
6XA1|1|L5|U|2624
6XA1|1|L5|G|2625
6XA1|1|L5|U|2626
6XA1|1|L5|G|2627
6XA1|1|L5|A|2628
6XA1|1|L5|A|2629
*
6XA1|1|L5|U|2679
6XA1|1|L5|G|2680
6XA1|1|L5|G|2681
6XA1|1|L5|A|2682
6XA1|1|L5|A|2683
6XA1|1|L5|A|2684
6XA1|1|L5|G|2685
*
6XA1|1|L5|U|2705
6XA1|1|L5|C|2706

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38