J4_6XA1_009
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XA1_009 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1496
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XA1|1|L5|G|3613
6XA1|1|L5|A|3614
6XA1|1|L5|C|3615
6XA1|1|L5|PSU|3616
6XA1|1|L5|G|3617
*
6XA1|1|L5|C|3629
6XA1|1|L5|A|3630
6XA1|1|L5|A|3631
6XA1|1|L5|A|3632
6XA1|1|L5|G|3633
*
6XA1|1|L5|U|3669
6XA1|1|L5|G|3670
6XA1|1|L5|A|3671
6XA1|1|L5|U|3672
6XA1|1|L5|U|3673
*
6XA1|1|L5|A|3800
6XA1|1|L5|U|3801
6XA1|1|L5|G|3802
6XA1|1|L5|A|3803
6XA1|1|L5|A2M|3804
6XA1|1|L5|C|3805
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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