J4_6XA1_010
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 6XA1|1|L5|UY1|3797
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XA1_010 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1023
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XA1|1|L5|C|3675
6XA1|1|L5|U|3676
6XA1|1|L5|G|3677
*
6XA1|1|L5|C|3731
6XA1|1|L5|G|3732
*
6XA1|1|L5|C|3750
6XA1|1|L5|U|3751
6XA1|1|L5|U|3752
6XA1|1|L5|A|3753
6XA1|1|L5|A|3754
6XA1|1|L5|G|3755
6XA1|1|L5|G|3756
6XA1|1|L5|U|3757
6XA1|1|L5|A|3758
6XA1|1|L5|G|3759
*
6XA1|1|L5|U|3793
6XA1|1|L5|G|3794
6XA1|1|L5|A|3795
6XA1|1|L5|A|3796
6XA1|1|L5|UY1|3797
6XA1|1|L5|G|3798
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Bv
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: