J4_6XE0_003
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6XE0|1|W|A|815
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XE0_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1256
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XE0|1|W|G|575
6XE0|1|W|C|576
6XE0|1|W|G|577
*
6XE0|1|W|C|764
6XE0|1|W|G|765
6XE0|1|W|A|766
6XE0|1|W|A|767
6XE0|1|W|A|768
6XE0|1|W|G|769
*
6XE0|1|W|C|810
6XE0|1|W|C|811
6XE0|1|W|G|812
6XE0|1|W|U|813
6XE0|1|W|A|814
6XE0|1|W|A|815
6XE0|1|W|A|816
6XE0|1|W|C|817
6XE0|1|W|G|818
6XE0|1|W|A|819
6XE0|1|W|U|820
6XE0|1|W|G|821
*
6XE0|1|W|C|879
6XE0|1|W|C|880
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: