J4_6XGF_003

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6XGF|1|D|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XGF_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XGF|1|D|G|115
6XGF|1|D|A|116
6XGF|1|D|G|117
6XGF|1|D|U|118
6XGF|1|D|A|119
6XGF|1|D|A|120
6XGF|1|D|U|121
6XGF|1|D|G|122
*
6XGF|1|D|U|239
6XGF|1|D|G|240
*
6XGF|1|D|C|286
6XGF|1|D|U|287
6XGF|1|D|A|288
6XGF|1|D|G|289
*
6XGF|1|D|C|311
6XGF|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17