J4_6XGF_006

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6XGF|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XGF_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XGF|1|a|C|268
6XGF|1|a|C|269
*
6XGF|1|a|G|370
6XGF|1|a|A|371
6XGF|1|a|G|372
6XGF|1|a|U|373
6XGF|1|a|A|374
6XGF|1|a|G|375
*
6XGF|1|a|U|399
6XGF|1|a|G|400
6XGF|1|a|A|401
6XGF|1|a|A|402
6XGF|1|a|U|403
6XGF|1|a|A|404
6XGF|1|a|U|405
6XGF|1|a|G|406
*
6XGF|1|a|C|421
6XGF|1|a|A|422
6XGF|1|a|A|423
6XGF|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9