3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
UC*GGUGAG*CU*AAUCGUA
Length
17 nucleotides
Bulged bases
6XGF|1|a|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XGF_011 not in the Motif Atlas
Homologous match to J4_5J7L_023
Geometric discrepancy: 0.0611
The information below is about J4_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6XGF|1|a|U|1313
6XGF|1|a|C|1314
*
6XGF|1|a|G|1338
6XGF|1|a|G|1339
6XGF|1|a|U|1340
6XGF|1|a|G|1341
6XGF|1|a|A|1342
6XGF|1|a|G|1343
*
6XGF|1|a|C|1404
6XGF|1|a|U|1405
*
6XGF|1|a|A|1597
6XGF|1|a|A|1598
6XGF|1|a|U|1599
6XGF|1|a|C|1600
6XGF|1|a|G|1601
6XGF|1|a|U|1602
6XGF|1|a|A|1603

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L23

Coloring options:


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