J4_6XHV_027

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6XHV|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHV_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0766

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XHV|1|2a|G|115
6XHV|1|2a|A|116
6XHV|1|2a|G|117
6XHV|1|2a|U|118
6XHV|1|2a|A|119
6XHV|1|2a|A|120
6XHV|1|2a|C|121
6XHV|1|2a|G|122
*
6XHV|1|2a|U|239
6XHV|1|2a|C|240
*
6XHV|1|2a|G|286
6XHV|1|2a|U|287
6XHV|1|2a|A|288
6XHV|1|2a|G|289
*
6XHV|1|2a|C|311
6XHV|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17