J4_6XHW_017

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6XHW|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHW_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1109

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XHW|1|2A|C|268
6XHW|1|2A|U|269
*
6XHW|1|2A|G|370
6XHW|1|2A|A|371
6XHW|1|2A|G|372
6XHW|1|2A|U|373
6XHW|1|2A|A|374
6XHW|1|2A|C|375
*
6XHW|1|2A|G|399
6XHW|1|2A|G|400
6XHW|1|2A|A|401
6XHW|1|2A|A|402
6XHW|1|2A|U|403
6XHW|1|2A|C|404
6XHW|1|2A|U|405
6XHW|1|2A|G|406
*
6XHW|1|2A|U|421
6XHW|1|2A|A|422
6XHW|1|2A|A|423
6XHW|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9