J4_6XHW_032
3D structure
- PDB id
- 6XHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6XHW|1|2y|4SU|8, 6XHW|1|2y|U|47, 6XHW|1|2y|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XHW_032 not in the Motif Atlas
- Homologous match to J4_4WT8_031
- Geometric discrepancy: 0.2898
- The information below is about J4_4WT8_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
6XHW|1|2y|A|7
6XHW|1|2y|4SU|8
6XHW|1|2y|A|9
6XHW|1|2y|G|10
*
6XHW|1|2y|C|25
6XHW|1|2y|A|26
6XHW|1|2y|G|27
*
6XHW|1|2y|C|43
6XHW|1|2y|G|44
6XHW|1|2y|U|45
6XHW|1|2y|7MG|46
6XHW|1|2y|U|47
6XHW|1|2y|C|48
6XHW|1|2y|C|49
*
6XHW|1|2y|G|65
6XHW|1|2y|U|66
Current chains
- Chain 2y
- E-site tRNA
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
Coloring options: