J4_6XHX_014

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6XHX|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHX_014 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0791

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XHX|1|2A|C|268
6XHX|1|2A|U|269
*
6XHX|1|2A|G|370
6XHX|1|2A|A|371
6XHX|1|2A|G|372
6XHX|1|2A|U|373
6XHX|1|2A|A|374
6XHX|1|2A|C|375
*
6XHX|1|2A|G|399
6XHX|1|2A|G|400
6XHX|1|2A|A|401
6XHX|1|2A|A|402
6XHX|1|2A|U|403
6XHX|1|2A|C|404
6XHX|1|2A|U|405
6XHX|1|2A|G|406
*
6XHX|1|2A|U|421
6XHX|1|2A|A|422
6XHX|1|2A|A|423
6XHX|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9