J4_6XHY_004

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6XHY|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHY_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0581

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6XHY|1|1A|G|1310
6XHY|1|1A|G|1311
6XHY|1|1A|U|1312
6XHY|1|1A|U|1313
6XHY|1|1A|C|1314
*
6XHY|1|1A|G|1338
6XHY|1|1A|G|1339
6XHY|1|1A|U|1340
6XHY|1|1A|U|1341
6XHY|1|1A|A|1342
6XHY|1|1A|G|1343
*
6XHY|1|1A|C|1404
6XHY|1|1A|U|1405
*
6XHY|1|1A|A|1597
6XHY|1|1A|C|1598
6XHY|1|1A|C|1599
6XHY|1|1A|C|1600
6XHY|1|1A|G|1601
6XHY|1|1A|U|1602
6XHY|1|1A|A|1603
6XHY|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23