J4_6XHY_017

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6XHY|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHY_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0954

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6XHY|1|2A|C|268
6XHY|1|2A|U|269
*
6XHY|1|2A|G|370
6XHY|1|2A|A|371
6XHY|1|2A|G|372
6XHY|1|2A|U|373
6XHY|1|2A|A|374
6XHY|1|2A|C|375
*
6XHY|1|2A|G|399
6XHY|1|2A|G|400
6XHY|1|2A|A|401
6XHY|1|2A|A|402
6XHY|1|2A|U|403
6XHY|1|2A|C|404
6XHY|1|2A|U|405
6XHY|1|2A|G|406
*
6XHY|1|2A|U|421
6XHY|1|2A|A|422
6XHY|1|2A|A|423
6XHY|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9