J4_6XHY_027

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6XHY|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHY_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0546

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XHY|1|2a|G|115
6XHY|1|2a|A|116
6XHY|1|2a|G|117
6XHY|1|2a|U|118
6XHY|1|2a|A|119
6XHY|1|2a|A|120
6XHY|1|2a|C|121
6XHY|1|2a|G|122
*
6XHY|1|2a|U|239
6XHY|1|2a|C|240
*
6XHY|1|2a|G|286
6XHY|1|2a|U|287
6XHY|1|2a|A|288
6XHY|1|2a|G|289
*
6XHY|1|2a|C|311
6XHY|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17