J4_6XII_007

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XII_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0511

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6XII|1|a|G|297
6XII|1|a|G|298
6XII|1|a|A|299
6XII|1|a|A|300
6XII|1|a|G|301
*
6XII|1|a|C|316
6XII|1|a|G|317
6XII|1|a|C|318
6XII|1|a|G|319
*
6XII|1|a|C|323
6XII|1|a|A|324
6XII|1|a|G|325
*
6XII|1|a|C|337
6XII|1|a|G|338
6XII|1|a|U|339
6XII|1|a|A|340
6XII|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4