J4_6XIJ_006

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6XIJ|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XIJ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XIJ|1|a|C|268
6XIJ|1|a|C|269
*
6XIJ|1|a|G|370
6XIJ|1|a|A|371
6XIJ|1|a|G|372
6XIJ|1|a|U|373
6XIJ|1|a|A|374
6XIJ|1|a|G|375
*
6XIJ|1|a|U|399
6XIJ|1|a|G|400
6XIJ|1|a|A|401
6XIJ|1|a|A|402
6XIJ|1|a|U|403
6XIJ|1|a|A|404
6XIJ|1|a|U|405
6XIJ|1|a|G|406
*
6XIJ|1|a|C|421
6XIJ|1|a|A|422
6XIJ|1|a|A|423
6XIJ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9