J4_6XIQ_001

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

6XIQ|1|1|A|296, 6XIQ|1|1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|U|112
6XIQ|1|1|C|113
*
6XIQ|1|1|G|267
6XIQ|1|1|A|268
6XIQ|1|1|G|269
6XIQ|1|1|U|270
6XIQ|1|1|C|271
6XIQ|1|1|G|272
*
6XIQ|1|1|C|293
6XIQ|1|1|U|294
6XIQ|1|1|A|295
6XIQ|1|1|A|296
6XIQ|1|1|G|297
6XIQ|1|1|U|298
6XIQ|1|1|G|299
*
6XIQ|1|1|U|316
6XIQ|1|1|A|317
6XIQ|1|1|A|318
6XIQ|1|1|A|319

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain G

RPL8A isoform 1

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain i

60S ribosomal protein L36-A