J4_6XIQ_003
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGAG*CGUAAUGAAAGUGAACGUAGG*UCGAC*GUAAGAG
- Length
- 37 nucleotides
- Bulged bases
- 6XIQ|1|1|A|677, 6XIQ|1|1|G|703, 6XIQ|1|1|A|705, 6XIQ|1|1|A|711, 6XIQ|1|1|C|717, 6XIQ|1|1|G|718, 6XIQ|1|1|A|720, 6XIQ|1|1|A|783, 6XIQ|1|1|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|C|675
6XIQ|1|1|G|676
6XIQ|1|1|A|677
6XIQ|1|1|G|678
*
6XIQ|1|1|C|702
6XIQ|1|1|G|703
6XIQ|1|1|U|704
6XIQ|1|1|A|705
6XIQ|1|1|A|706
6XIQ|1|1|U|707
6XIQ|1|1|G|708
6XIQ|1|1|A|709
6XIQ|1|1|A|710
6XIQ|1|1|A|711
6XIQ|1|1|G|712
6XIQ|1|1|U|713
6XIQ|1|1|G|714
6XIQ|1|1|A|715
6XIQ|1|1|A|716
6XIQ|1|1|C|717
6XIQ|1|1|G|718
6XIQ|1|1|U|719
6XIQ|1|1|A|720
6XIQ|1|1|G|721
6XIQ|1|1|G|722
*
6XIQ|1|1|U|748
6XIQ|1|1|C|749
6XIQ|1|1|G|750
6XIQ|1|1|A|751
6XIQ|1|1|C|752
*
6XIQ|1|1|G|781
6XIQ|1|1|U|782
6XIQ|1|1|A|783
6XIQ|1|1|A|784
6XIQ|1|1|G|785
6XIQ|1|1|A|786
6XIQ|1|1|G|787
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- RPL29 isoform 1
- Chain i
- 60S ribosomal protein L36-A
Coloring options: