J4_6XIQ_005
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUC*GGAAUCC*GGAACC*GGUC
- Length
- 21 nucleotides
- Bulged bases
- 6XIQ|1|1|U|1530, 6XIQ|1|1|A|1593, 6XIQ|1|1|U|1595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|1528
6XIQ|1|1|A|1529
6XIQ|1|1|U|1530
6XIQ|1|1|C|1531
*
6XIQ|1|1|G|1591
6XIQ|1|1|G|1592
6XIQ|1|1|A|1593
6XIQ|1|1|A|1594
6XIQ|1|1|U|1595
6XIQ|1|1|C|1596
6XIQ|1|1|C|1597
*
6XIQ|1|1|G|1610
6XIQ|1|1|G|1611
6XIQ|1|1|A|1612
6XIQ|1|1|A|1613
6XIQ|1|1|C|1614
6XIQ|1|1|C|1615
*
6XIQ|1|1|G|1829
6XIQ|1|1|G|1830
6XIQ|1|1|U|1831
6XIQ|1|1|C|1832
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- RPL38 isoform 1
- Chain l
- 60S ribosomal protein L39
Coloring options: