3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GAUC*GGAAUCC*GGAACC*GGUC
Length
21 nucleotides
Bulged bases
6XIQ|1|1|U|1530, 6XIQ|1|1|A|1593, 6XIQ|1|1|U|1595
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIQ|1|1|G|1528
6XIQ|1|1|A|1529
6XIQ|1|1|U|1530
6XIQ|1|1|C|1531
*
6XIQ|1|1|G|1591
6XIQ|1|1|G|1592
6XIQ|1|1|A|1593
6XIQ|1|1|A|1594
6XIQ|1|1|U|1595
6XIQ|1|1|C|1596
6XIQ|1|1|C|1597
*
6XIQ|1|1|G|1610
6XIQ|1|1|G|1611
6XIQ|1|1|A|1612
6XIQ|1|1|A|1613
6XIQ|1|1|C|1614
6XIQ|1|1|C|1615
*
6XIQ|1|1|G|1829
6XIQ|1|1|G|1830
6XIQ|1|1|U|1831
6XIQ|1|1|C|1832

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain X
60S ribosomal protein L25
Chain g
60S ribosomal protein L34-A
Chain k
RPL38 isoform 1
Chain l
60S ribosomal protein L39

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1285 s