J4_6XIQ_010

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAUU*AUUC*GCUG*CAUG

Length

17 nucleotides

Bulged bases

6XIQ|1|1|A|3011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|U|3010
6XIQ|1|1|A|3011
6XIQ|1|1|A|3012
6XIQ|1|1|U|3013
6XIQ|1|1|U|3014
*
6XIQ|1|1|A|3040
6XIQ|1|1|U|3041
6XIQ|1|1|U|3042
6XIQ|1|1|C|3043
*
6XIQ|1|1|G|3098
6XIQ|1|1|C|3099
6XIQ|1|1|U|3100
6XIQ|1|1|G|3101
*
6XIQ|1|1|C|3133
6XIQ|1|1|A|3134
6XIQ|1|1|U|3135
6XIQ|1|1|G|3136

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain O

60S ribosomal protein L16-A

Chain V

60S ribosomal protein L23-A

Chain m

60S ribosomal protein L40