J4_6XIQ_011
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAUGUCUAAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGC*GAGGGAG*CUACCAC*GGCAG
- Length
- 63 nucleotides
- Bulged bases
- 6XIQ|1|2|U|56, 6XIQ|1|2|C|59, 6XIQ|1|2|U|60, 6XIQ|1|2|U|66, 6XIQ|1|2|A|68, 6XIQ|1|2|U|75, 6XIQ|1|2|A|76, 6XIQ|1|2|A|93, 6XIQ|1|2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|2|C|54
6XIQ|1|2|A|55
6XIQ|1|2|U|56
6XIQ|1|2|G|57
6XIQ|1|2|U|58
6XIQ|1|2|C|59
6XIQ|1|2|U|60
6XIQ|1|2|A|61
6XIQ|1|2|A|62
6XIQ|1|2|G|63
6XIQ|1|2|U|64
6XIQ|1|2|A|65
6XIQ|1|2|U|66
6XIQ|1|2|A|67
6XIQ|1|2|A|68
6XIQ|1|2|G|69
6XIQ|1|2|C|70
6XIQ|1|2|A|71
6XIQ|1|2|A|72
6XIQ|1|2|U|73
6XIQ|1|2|U|74
6XIQ|1|2|U|75
6XIQ|1|2|A|76
6XIQ|1|2|U|77
6XIQ|1|2|A|78
6XIQ|1|2|C|79
6XIQ|1|2|A|80
6XIQ|1|2|G|81
6XIQ|1|2|U|82
6XIQ|1|2|G|83
6XIQ|1|2|A|84
6XIQ|1|2|A|85
6XIQ|1|2|A|86
6XIQ|1|2|C|87
6XIQ|1|2|U|88
6XIQ|1|2|G|89
6XIQ|1|2|C|90
6XIQ|1|2|G|91
6XIQ|1|2|A|92
6XIQ|1|2|A|93
6XIQ|1|2|U|94
6XIQ|1|2|G|95
6XIQ|1|2|G|96
6XIQ|1|2|C|97
*
6XIQ|1|2|G|386
6XIQ|1|2|A|387
6XIQ|1|2|G|388
6XIQ|1|2|G|389
6XIQ|1|2|G|390
6XIQ|1|2|A|391
6XIQ|1|2|G|392
*
6XIQ|1|2|C|405
6XIQ|1|2|U|406
6XIQ|1|2|A|407
6XIQ|1|2|C|408
6XIQ|1|2|C|409
6XIQ|1|2|A|410
6XIQ|1|2|C|411
*
6XIQ|1|2|G|422
6XIQ|1|2|G|423
6XIQ|1|2|C|424
6XIQ|1|2|A|425
6XIQ|1|2|G|426
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 40S ribosomal protein S24-A
- Chain V
- 60S ribosomal protein L23-A
- Chain u
- 40S ribosomal protein S4-A
- Chain w
- 40S ribosomal protein S6-A
- Chain y
- RPS8A isoform 1
- Chain z
- 40S ribosomal protein S9-A
Coloring options: