J4_6XIQ_014
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAUUUAGC*GCGC*GAGGUCC*GAAUUC
- Length
- 26 nucleotides
- Bulged bases
- 6XIQ|1|AX|U|8, 6XIQ|1|AX|G|45, 6XIQ|1|AX|U|47, 6XIQ|1|AX|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|AX|G|3
6XIQ|1|AX|G|4
6XIQ|1|AX|A|5
6XIQ|1|AX|U|6
6XIQ|1|AX|U|7
6XIQ|1|AX|U|8
6XIQ|1|AX|A|9
6XIQ|1|AX|G|10
6XIQ|1|AX|C|11
*
6XIQ|1|AX|G|24
6XIQ|1|AX|C|25
6XIQ|1|AX|G|26
6XIQ|1|AX|C|27
*
6XIQ|1|AX|G|43
6XIQ|1|AX|A|44
6XIQ|1|AX|G|45
6XIQ|1|AX|G|46
6XIQ|1|AX|U|47
6XIQ|1|AX|C|48
6XIQ|1|AX|C|49
*
6XIQ|1|AX|G|65
6XIQ|1|AX|A|66
6XIQ|1|AX|A|67
6XIQ|1|AX|U|68
6XIQ|1|AX|U|69
6XIQ|1|AX|C|70
Current chains
- Chain AX
- Transfer RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain o
- 60S ribosomal protein L42-A
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