J4_6XIR_005

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XIR_005 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.1283

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6XIR|1|1|G|1674
6XIR|1|1|G|1675
*
6XIR|1|1|C|1693
6XIR|1|1|U|1694
*
6XIR|1|1|A|1752
6XIR|1|1|G|1753
*
6XIR|1|1|U|1772
6XIR|1|1|C|1773

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L22-A

Chain g

60S ribosomal protein L34-A

Chain k

RPL38 isoform 1