3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGAUAAA*UC*GCGC*GG
Length
15 nucleotides
Bulged bases
6XQD|1|1A|G|1271, 6XQD|1|1A|A|1272, 6XQD|1|1A|U|1273, 6XQD|1|1A|G|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XQD_003 not in the Motif Atlas
Homologous match to J4_9DFE_003
Geometric discrepancy: 0.0503
The information below is about J4_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6XQD|1|1A|C|1270
6XQD|1|1A|G|1271
6XQD|1|1A|A|1272
6XQD|1|1A|U|1273
6XQD|1|1A|A|1274
6XQD|1|1A|A|1275
6XQD|1|1A|A|1276
*
6XQD|1|1A|U|1294
6XQD|1|1A|C|1295
*
6XQD|1|1A|G|1645
6XQD|1|1A|C|1646
6XQD|1|1A|G|1647
6XQD|1|1A|C|1648
*
6XQD|1|1A|G|2009
6XQD|1|1A|G|2010

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1R
50S ribosomal protein L17
Chain 1W
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 2.1676 s