J4_6XQD_015

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6XQD|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQD_015 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0774

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XQD|1|2A|C|268
6XQD|1|2A|U|269
*
6XQD|1|2A|G|370
6XQD|1|2A|A|371
6XQD|1|2A|G|372
6XQD|1|2A|U|373
6XQD|1|2A|A|374
6XQD|1|2A|C|375
*
6XQD|1|2A|G|399
6XQD|1|2A|G|400
6XQD|1|2A|A|401
6XQD|1|2A|A|402
6XQD|1|2A|U|403
6XQD|1|2A|C|404
6XQD|1|2A|U|405
6XQD|1|2A|G|406
*
6XQD|1|2A|U|421
6XQD|1|2A|A|422
6XQD|1|2A|A|423
6XQD|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9