J4_6XQD_024

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQD_024 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0658

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6XQD|1|2A|G|2643
6XQD|1|2A|G|2644
6XQD|1|2A|G|2645
6XQD|1|2A|C|2646
*
6XQD|1|2A|G|2674
6XQD|1|2A|A|2675
6XQD|1|2A|C|2676
*
6XQD|1|2A|G|2731
6XQD|1|2A|G|2732
6XQD|1|2A|A|2733
6XQD|1|2A|A|2734
6XQD|1|2A|G|2735
*
6XQD|1|2A|C|2769
6XQD|1|2A|G|2770
6XQD|1|2A|C|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14