3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
6XQD|1|2a|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XQD_025 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0868
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6XQD|1|2a|G|115
6XQD|1|2a|A|116
6XQD|1|2a|G|117
6XQD|1|2a|U|118
6XQD|1|2a|A|119
6XQD|1|2a|A|120
6XQD|1|2a|C|121
6XQD|1|2a|G|122
*
6XQD|1|2a|U|239
6XQD|1|2a|C|240
*
6XQD|1|2a|G|286
6XQD|1|2a|U|287
6XQD|1|2a|A|288
6XQD|1|2a|G|289
*
6XQD|1|2a|C|311
6XQD|1|2a|C|312

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2p
30S ribosomal protein S16
Chain 2q
30S ribosomal protein S17

Coloring options:


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