J4_6XQE_001

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6XQE|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQE_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0907

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XQE|1|1A|C|268
6XQE|1|1A|U|269
*
6XQE|1|1A|G|370
6XQE|1|1A|A|371
6XQE|1|1A|G|372
6XQE|1|1A|U|373
6XQE|1|1A|A|374
6XQE|1|1A|C|375
*
6XQE|1|1A|G|399
6XQE|1|1A|G|400
6XQE|1|1A|A|401
6XQE|1|1A|A|402
6XQE|1|1A|U|403
6XQE|1|1A|C|404
6XQE|1|1A|U|405
6XQE|1|1A|G|406
*
6XQE|1|1A|U|421
6XQE|1|1A|A|422
6XQE|1|1A|A|423
6XQE|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9