J4_6XQE_005

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6XQE|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQE_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0865

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6XQE|1|1A|U|1313
6XQE|1|1A|C|1314
*
6XQE|1|1A|G|1338
6XQE|1|1A|G|1339
6XQE|1|1A|U|1340
6XQE|1|1A|U|1341
6XQE|1|1A|A|1342
6XQE|1|1A|G|1343
*
6XQE|1|1A|C|1404
6XQE|1|1A|U|1405
*
6XQE|1|1A|A|1597
6XQE|1|1A|C|1598
6XQE|1|1A|C|1599
6XQE|1|1A|C|1600
6XQE|1|1A|G|1601
6XQE|1|1A|U|1602
6XQE|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23