J4_6XYW_011

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAGUAAGG*UA*UUAG*CC

Length

16 nucleotides

Bulged bases

6XYW|1|2|G|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XYW_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2908

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XYW|1|2|G|179
6XYW|1|2|A|180
6XYW|1|2|G|181
6XYW|1|2|U|182
6XYW|1|2|A|183
6XYW|1|2|A|184
6XYW|1|2|G|185
6XYW|1|2|G|186
*
6XYW|1|2|U|258
6XYW|1|2|A|259
*
6XYW|1|2|U|305
6XYW|1|2|U|306
6XYW|1|2|A|307
6XYW|1|2|G|308
*
6XYW|1|2|C|330
6XYW|1|2|C|331

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial

Chain Bp

Nucleic acid-binding, OB-fold-like protein