J4_6XZ7_001

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6XZ7|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZ7_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1005

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XZ7|1|A|C|268
6XZ7|1|A|C|269
*
6XZ7|1|A|G|370
6XZ7|1|A|A|371
6XZ7|1|A|G|372
6XZ7|1|A|U|373
6XZ7|1|A|A|374
6XZ7|1|A|G|375
*
6XZ7|1|A|U|399
6XZ7|1|A|G|400
6XZ7|1|A|A|401
6XZ7|1|A|A|402
6XZ7|1|A|U|403
6XZ7|1|A|A|404
6XZ7|1|A|U|405
6XZ7|1|A|G|406
*
6XZ7|1|A|C|421
6XZ7|1|A|A|422
6XZ7|1|A|A|423
6XZ7|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28