J4_6XZA_005

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZA_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0464

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6XZA|1|A2|G|297
6XZA|1|A2|G|298
6XZA|1|A2|A|299
6XZA|1|A2|A|300
6XZA|1|A2|G|301
*
6XZA|1|A2|C|316
6XZA|1|A2|G|317
6XZA|1|A2|C|318
6XZA|1|A2|G|319
*
6XZA|1|A2|C|323
6XZA|1|A2|A|324
6XZA|1|A2|G|325
*
6XZA|1|A2|C|337
6XZA|1|A2|G|338
6XZA|1|A2|U|339
6XZA|1|A2|A|340
6XZA|1|A2|C|341

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain U2

50S ribosomal protein L24