J4_6XZA_012
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6XZA|1|A2|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XZA_012 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0865
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XZA|1|A2|C|1833
6XZA|1|A2|U|1834
6XZA|1|A2|2MG|1835
*
6XZA|1|A2|C|1905
6XZA|1|A2|G|1906
*
6XZA|1|A2|C|1924
6XZA|1|A2|C|1925
6XZA|1|A2|U|1926
6XZA|1|A2|A|1927
6XZA|1|A2|A|1928
6XZA|1|A2|G|1929
6XZA|1|A2|G|1930
6XZA|1|A2|U|1931
6XZA|1|A2|A|1932
6XZA|1|A2|G|1933
*
6XZA|1|A2|C|1967
6XZA|1|A2|G|1968
6XZA|1|A2|A|1969
6XZA|1|A2|A|1970
6XZA|1|A2|U|1971
6XZA|1|A2|G|1972
Current chains
- Chain A2
- 23S rRNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain C2
- 50S ribosomal protein L2
- Chain f2
- Transfer RNA; tRNA
Coloring options: