J4_6XZB_002

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6XZB|1|A1|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1074

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XZB|1|A1|G|142
6XZB|1|A1|A|143
6XZB|1|A1|G|144
*
6XZB|1|A1|C|178
6XZB|1|A1|A|179
6XZB|1|A1|U|180
6XZB|1|A1|A|181
6XZB|1|A1|A|182
6XZB|1|A1|C|183
6XZB|1|A1|G|184
*
6XZB|1|A1|C|193
6XZB|1|A1|C|194
6XZB|1|A1|A|195
6XZB|1|A1|A|196
6XZB|1|A1|A|197
6XZB|1|A1|G|198
*
6XZB|1|A1|U|219
6XZB|1|A1|G|220
6XZB|1|A1|C|221

Current chains

Chain A1

16S rRNA

Nearby chains

Chain T1

30S ribosomal protein S20