J4_6XZB_004

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6XZB|1|A2|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1005

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XZB|1|A2|C|268
6XZB|1|A2|C|269
*
6XZB|1|A2|G|370
6XZB|1|A2|A|371
6XZB|1|A2|G|372
6XZB|1|A2|U|373
6XZB|1|A2|A|374
6XZB|1|A2|G|375
*
6XZB|1|A2|U|399
6XZB|1|A2|G|400
6XZB|1|A2|A|401
6XZB|1|A2|A|402
6XZB|1|A2|U|403
6XZB|1|A2|A|404
6XZB|1|A2|U|405
6XZB|1|A2|G|406
*
6XZB|1|A2|C|421
6XZB|1|A2|A|422
6XZB|1|A2|A|423
6XZB|1|A2|G|424

Current chains

Chain A2

23S rRNA

Nearby chains

Chain X2

50S ribosomal protein L28