J4_6XZB_007

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6XZB|1|A2|G|1271, 6XZB|1|A2|A|1272, 6XZB|1|A2|U|1273, 6XZB|1|A2|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0623

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6XZB|1|A2|C|1270
6XZB|1|A2|G|1271
6XZB|1|A2|A|1272
6XZB|1|A2|U|1273
6XZB|1|A2|A|1274
6XZB|1|A2|A|1275
6XZB|1|A2|A|1276
*
6XZB|1|A2|U|1294
6XZB|1|A2|C|1295
*
6XZB|1|A2|G|1645
6XZB|1|A2|C|1646
6XZB|1|A2|U|1647
6XZB|1|A2|U|1648
*
6XZB|1|A2|A|2009
6XZB|1|A2|G|2010

Current chains

Chain A2

23S rRNA

Nearby chains

Chain N2

50S ribosomal protein L17

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32