3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XZB_014 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.0498
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6XZB|1|A2|G|2643
6XZB|1|A2|G|2644
6XZB|1|A2|G|2645
6XZB|1|A2|C|2646
*
6XZB|1|A2|G|2674
6XZB|1|A2|A|2675
6XZB|1|A2|C|2676
*
6XZB|1|A2|G|2731
6XZB|1|A2|G|2732
6XZB|1|A2|A|2733
6XZB|1|A2|A|2734
6XZB|1|A2|G|2735
*
6XZB|1|A2|U|2769
6XZB|1|A2|G|2770
6XZB|1|A2|C|2771

Current chains

Chain A2
23S rRNA

Nearby chains

Chain D2
50S ribosomal protein L3
Chain J2
50S ribosomal protein L13
Chain K2
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1286 s