J4_6XZB_014

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0498

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6XZB|1|A2|G|2643
6XZB|1|A2|G|2644
6XZB|1|A2|G|2645
6XZB|1|A2|C|2646
*
6XZB|1|A2|G|2674
6XZB|1|A2|A|2675
6XZB|1|A2|C|2676
*
6XZB|1|A2|G|2731
6XZB|1|A2|G|2732
6XZB|1|A2|A|2733
6XZB|1|A2|A|2734
6XZB|1|A2|G|2735
*
6XZB|1|A2|U|2769
6XZB|1|A2|G|2770
6XZB|1|A2|C|2771

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L13

Chain K2

50S ribosomal protein L14