J4_6Y0G_001
3D structure
- PDB id
- 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in classical-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6Y0G|1|B4|U|8, 6Y0G|1|B4|U|47, 6Y0G|1|B4|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Y0G_001 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.229
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6Y0G|1|B4|A|7
6Y0G|1|B4|U|8
6Y0G|1|B4|A|9
6Y0G|1|B4|G|10
*
6Y0G|1|B4|C|25
6Y0G|1|B4|A|26
6Y0G|1|B4|G|27
*
6Y0G|1|B4|C|43
6Y0G|1|B4|G|44
6Y0G|1|B4|U|45
6Y0G|1|B4|G|46
6Y0G|1|B4|U|47
6Y0G|1|B4|C|48
6Y0G|1|B4|C|49
*
6Y0G|1|B4|G|65
6Y0G|1|B4|U|66
Current chains
- Chain B4
- tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10-like
- Chain SS
- 40S ribosomal protein S18
- Chain SZ
- 40S ribosomal protein S25
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