J4_6Y3G_001
3D structure
- PDB id
- 6Y3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of phenylalanine tRNA from Escherichia coli
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGUG(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6Y3G|1|F|4SU|8, 6Y3G|1|F|U|45, 6Y3G|1|F|3AU|47, 6Y3G|1|F|C|48
- QA status
- Modified nucleotides: 4SU, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Y3G_001 not in the Motif Atlas
- Homologous match to J4_3WFS_001
- Geometric discrepancy: 0.4955
- The information below is about J4_3WFS_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Y3G|1|F|A|7
6Y3G|1|F|4SU|8
6Y3G|1|F|A|9
6Y3G|1|F|G|10
*
6Y3G|1|F|C|25
6Y3G|1|F|A|26
6Y3G|1|F|G|27
*
6Y3G|1|F|C|43
6Y3G|1|F|G|44
6Y3G|1|F|U|45
6Y3G|1|F|G|46
6Y3G|1|F|3AU|47
6Y3G|1|F|C|48
6Y3G|1|F|C|49
*
6Y3G|1|F|G|65
6Y3G|1|F|U|66
Current chains
- Chain F
- RNA (75-MER)
Nearby chains
No other chains within 10ÅColoring options: