J4_6Y57_005

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6Y57|1|L5|A|2366, 6Y57|1|L5|U|2369, 6Y57|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|L5|C|2365
6Y57|1|L5|A|2366
6Y57|1|L5|A|2367
6Y57|1|L5|A|2368
6Y57|1|L5|U|2369
6Y57|1|L5|A|2370
6Y57|1|L5|U|2371
*
6Y57|1|L5|A|2389
6Y57|1|L5|G|2390
6Y57|1|L5|G|2391
*
6Y57|1|L5|C|2824
6Y57|1|L5|A|2825
6Y57|1|L5|U|2826
6Y57|1|L5|G|2827
6Y57|1|L5|U|2828
6Y57|1|L5|U|2829
*
6Y57|1|L5|A|3856
6Y57|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31