J4_6Y69_001

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6Y69|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Y69_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1077

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6Y69|1|A|C|268
6Y69|1|A|C|269
*
6Y69|1|A|G|370
6Y69|1|A|A|371
6Y69|1|A|G|372
6Y69|1|A|U|373
6Y69|1|A|A|374
6Y69|1|A|G|375
*
6Y69|1|A|U|399
6Y69|1|A|G|400
6Y69|1|A|A|401
6Y69|1|A|A|402
6Y69|1|A|U|403
6Y69|1|A|A|404
6Y69|1|A|U|405
6Y69|1|A|G|406
*
6Y69|1|A|C|421
6Y69|1|A|A|422
6Y69|1|A|A|423
6Y69|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28